Version in base suite: 8.0.0-5

Base version: toil_8.0.0-5
Target version: toil_8.0.0-5+deb13u1
Base file: /srv/ftp-master.debian.org/ftp/pool/main/t/toil/toil_8.0.0-5.dsc
Target file: /srv/ftp-master.debian.org/policy/pool/main/t/toil/toil_8.0.0-5+deb13u1.dsc

 changelog                              |    8 +++
 patches/conditionally-skip-tests.patch |   73 +++++++++++++++++++++++++++++++++
 patches/series                         |    1 
 3 files changed, 82 insertions(+)

dpkg-source: warning: cannot verify inline signature for /srv/release.debian.org/tmp/tmp96wxxk22/toil_8.0.0-5.dsc: no acceptable signature found
dpkg-source: warning: cannot verify inline signature for /srv/release.debian.org/tmp/tmp96wxxk22/toil_8.0.0-5+deb13u1.dsc: no acceptable signature found
diff -Nru toil-8.0.0/debian/changelog toil-8.0.0/debian/changelog
--- toil-8.0.0/debian/changelog	2025-04-09 11:42:27.000000000 +0000
+++ toil-8.0.0/debian/changelog	2026-04-29 18:30:00.000000000 +0000
@@ -1,3 +1,11 @@
+toil (8.0.0-5+deb13u1) trixie; urgency=medium
+
+  * Team upload.
+  * Conditionally skip tests requiring more CPUs than available.
+    Closes: #1108056.
+
+ -- Santiago Vila <sanvila@debian.org>  Wed, 29 Apr 2026 20:30:00 +0200
+
 toil (8.0.0-5) unstable; urgency=medium
 
   * d/rules: skip flaky testServices. Closes: #1101085
diff -Nru toil-8.0.0/debian/patches/conditionally-skip-tests.patch toil-8.0.0/debian/patches/conditionally-skip-tests.patch
--- toil-8.0.0/debian/patches/conditionally-skip-tests.patch	1970-01-01 00:00:00.000000000 +0000
+++ toil-8.0.0/debian/patches/conditionally-skip-tests.patch	2026-04-29 16:14:00.000000000 +0000
@@ -0,0 +1,73 @@
+From: Santiago Vila <sanvila@debian.org>
+Subject: Conditionally skip tests requiring more CPUs than available
+Bug-Debian: https://bugs.debian.org/1108056
+Forwarded: https://github.com/DataBiosphere/toil/issues/5482
+
+--- a/src/toil/test/batchSystems/batchSystemTest.py
++++ b/src/toil/test/batchSystems/batchSystemTest.py
+@@ -24,6 +24,8 @@
+ from fractions import Fraction
+ from unittest import skipIf
+ 
++import pytest
++
+ from toil.batchSystems.abstractBatchSystem import (
+     AbstractBatchSystem,
+     BatchSystemSupport,
+@@ -505,6 +507,10 @@
+                 _, maxValue = getCounters(counterPath)
+                 self.assertEqual(maxValue, self.cpuCount // coresPerJob)
+ 
++        @pytest.mark.skipif(
++            SingleMachineBatchSystem.numCores < 2,
++            reason="Need at least two cores to run this test",
++        )
+         def test_omp_threads(self):
+             """
+             Test if the OMP_NUM_THREADS env var is set correctly based on jobs.cores.
+--- a/src/toil/test/docs/scriptsTest.py
++++ b/src/toil/test/docs/scriptsTest.py
+@@ -68,6 +68,10 @@
+         n = re.search(pattern, outerr)
+         self.assertNotEqual(n, None, f"Pattern:\n{expectedPattern}\nOutput:\n{outerr}")
+ 
++    @pytest.mark.skipif(
++        os.cpu_count() < 2,
++        reason="Need at least two cores to run this test",
++    )
+     def testStats(self):
+         # This script asks for 4 cores but we might need to run the tests in only 3.
+         self.checkExitCode("tutorial_stats.py", ["--scale=0.5"])
+--- a/src/toil/test/src/promisedRequirementTest.py
++++ b/src/toil/test/src/promisedRequirementTest.py
+@@ -16,6 +16,8 @@
+ import os
+ import time
+ 
++import pytest
++
+ import toil.test.batchSystems.batchSystemTest as batchSystemTest
+ from toil.batchSystems.mesos.test import MesosTestSupport
+ from toil.job import Job, PromisedRequirement
+@@ -127,6 +129,10 @@
+             assert (minValue, maxValue) == (0, 0)
+             return counterPath
+ 
++        @pytest.mark.skipif(
++            os.cpu_count() < 2,
++            reason="Need at least two cores to run this test",
++        )
+         def testPromisesWithJobStoreFileObjects(self, caching=True):
+             """
+             Check whether FileID objects are being pickled properly when used as return
+@@ -153,6 +159,10 @@
+                 F1, self.getOptions(self._createTempDir("testFiles"), caching=caching)
+             )
+ 
++        @pytest.mark.skipif(
++            os.cpu_count() < 2,
++            reason="Need at least two cores to run this test",
++        )
+         def testPromisesWithNonCachingFileStore(self):
+             self.testPromisesWithJobStoreFileObjects(caching=False)
+ 
diff -Nru toil-8.0.0/debian/patches/series toil-8.0.0/debian/patches/series
--- toil-8.0.0/debian/patches/series	2025-03-17 18:11:04.000000000 +0000
+++ toil-8.0.0/debian/patches/series	2026-04-29 16:00:00.000000000 +0000
@@ -11,3 +11,4 @@
 accept_debian_packaged_docker_version.patch
 allow_newer_requests
 soften-psutil
+conditionally-skip-tests.patch